Investigators and Program Directors

Select Publications

• Lee A. Newberg and Charles E. Lawrence (2009) Exact calculation of distributions on integers, with application to sequence alignment. Journal of Computational Biology, 16(1), 1-18.
• Lee A. Newberg (2008) Significance of gapped sequence alignments. Journal of Computational Biology, 15(9), 1187-1194.
• Lee A. Newberg (2008) Memory-efficient dynamic programming backtrace and pairwise local sequence alignment. Bioinformatics, 24(16), 1772-1778.
• Lee A. Newberg, William A. Thompson, Sean Conlan, Thomas M. Smith, Lee Ann McCue, and Charles E. Lawrence (2007) A phylogenetic Gibbs sampler that yields centroid solutions for cis regulatory site prediction. Bioinformatics, 23(14), 1718-1727.
• William A. Thompson, Lee A. Newberg, Sean Conlan, Lee Ann McCue, and Charles E. Lawrence (2007) The Gibbs centroid sampler. Nucleic Acids Research, 35(Web Server Issue), W232-W237
• C. Steven Carmack, Lee Ann McCue, Lee A. Newberg and Charles E. Lawrence (2007) PhyloScan: Identification of transcription factor binding sites using cross-species evidence. Algorithms for Molecular Biology, 2(1), article 1.
• Lee A. Newberg, Lee Ann McCue and Charles E. Lawrence (2005) The Relative Inefficiency of Sequence Weights Approaches in Determining a Nucleotide Position Weight Matrix. Statistical Applications in Genetics and Molecular Biology, 4(1), 13.
• Lee A. Newberg and Charles E. Lawrence (2004) Mammalian genomes ease location of human DNA functional segments but not their description. Statistical Applications in Genetics and Molecular Biology, 3(1), 23.
• Lee A. Newberg (1996) The number of clone orderings. Discrete Applied Mathematics, 69(3), 233-245.
• Richard M. Karp and Lee A. Newberg (1995) An algorithm for analyzing probed partial digestion experiments. Computer Applications in the Biosciences, 11(3),229-235.
• Farid Alizadeh, Richard M. Karp, Lee A. Newberg, and Deborah K. Weisser (1995) Physical mapping of chromosomes: A combinatorial problem in molecular biology. Algorithmica, 13(1-2), 52-76.
• Lee A. Newberg (1994) Finding a most likely clone ordering from oligonucleotide hybridization data. Genomics, 21(3), 602-611.
• Lee A. Newberg and Dalit Naor (1993) A lower bound on the number of solutions to the probed partial digest problem. Advances in Applied Mathematics, 14(2), 172-183.
• Eric S. Lander, Philip Green, Jeff Abrahamson, A. A. Barlow, Mark J. Daly, Stephen E. Lincoln, and Lee A. Newberg (1987) MAPMAKER: An interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics, 1(2), 174-181.
• Lee A. Newberg (1993) Finding, Evaluating, and Counting DNA Physical Maps. PhD thesis, The University of California, Berkeley, CA.

Contact Information

Phone: 518-473-8426
Admin: 518-473-5938 or 518-473-6483

E-mail: lee.newberg@wadsworth.org