SPIDER: An Index of some Useful SPIDER Procedures

INDEX OF SOME USEFUL SPIDER PROCEDURES

Task	Uses operation
Align image series - using reference images.	AP SH
Anistropic Diffusion - Selecting parameters	CE AD
Average an image series	AS R
Back projection - conjugate gradient	BP CG
Back projection - constrained iterative	BP RP
Back projection - Fourier	BP 3F, BP 32F
Back projection - weighted	BP 3D
Filter reconstruction to a resolution limit	FQ
FSC - Computation.	RF 3
Mask image with a disk	FD
Renumber image series	VM
Renumber a file series	AC
Rotate and shift images	RT SQ
Rotate volume	RT 3D
Sum an image series	AD
Selection doc file - creation	DOC CREATE
Segmentation - Test filter	CE GNC, CE MED, CE LAH, ED, ER WA, CE RID, ...
Segmentation - Test thresholding	TH F, FC, FC E, CE
Threshold - remove outlying pixels.	TH
Tomographic reconstruction - single tilt	BP W2
Tomographic reconstruction - double tilt	BP 3D

In addition the following techniques pages have links to numerous SPIDER procedures.

Source: procedure_index.html Last update: 30 Dec. 2008 ArDean Leith