WWW Sites for Biological Electron Microscopy

A list of some WWW sites that I am aware of. Lack of inclusion here implies nothing.

• General WWW Sites for Biological Electron Microscopy
  • Wadsworth Center
    Home of (RVBC) The Resource for the Visualization of Biological Complexity and SPIDER System for Processing Image Data in Electron microscopy and Related fields)
  • Sites for Image Processing Software for Visualization
    The NIH's Clinical Center has a good list of sites for software which they use.
  • Scientific Visualization Sites from the Numerical Aerospace Simulation Facility at NASA Ames Research Center.
    Contains a list of Visualization links (May not be current).
  • Web Links for Microscopes and Microscopy
    Good list of WWW sites for electron, light, confocal, laser, scanning probe, nuclear magnetic, and x-ray microscopy.
  • WWW Virtual Library: Microscopy
    Good listing of WWW sites for all aspects of light microscopy, electron microscopy and other forms of microscopy. (Last updated 2005?.)
  • Microscopy Vendors Database
    Good listing of microscopy vendor sites compiled by Kaker.Com.
  • Biomedical Imaging on the WWW
    Good listing of Biomedical EM sites compiled by P. V. Osta.
  • 3-Dimensional Electron Microscopy
    Home of the 3D-EM mailing list at National Center for Microscopy and Imaging Research.
  • The Boulder Laboratory for3-Dimensional Fine Structure
    A National Resource Center devoted to "the development of new technologies for specimen preparation and image analysis to study the three-dimensional structure of cells and tissues". Also home for: IMOD software.
  • National Center for Microscopy and Imaging Research (NCMIR)
    A research facility for "advancing three-dimensional microscopy and imaging of biological materials". Also home for: SYNU software.
  • The National Center for Macromolecular Imaging
    at Baylor College of Medicine. Also home for: EMAN software.
  • Microscopy & Microanalysis WWW Site (Argonne Nat. Lab)
    Has info on the Microscopy and Microanalysis programs at Argonne National Labs as well as a good list of links to other Microscopy sites.

  • Univ. of Minnesota Supercomputing Institute
    Good listing of Sites for Visualization Software

• Serial Section & Stereo Reconstruction WWW Sites
  
  • Serial Section & Stereo Reconstruction Software
    My listing of sources that provide software.
• Single Particle Reconstruction WWW Sites
  
  • Electron microscopy for Dummies
    (Hanspeter Niederstrasser, U. C. Berkeley, CA)
    Instructions for single particle reconstruction.
  • Electron Microscopy Software (Tim Baker, Purdue Univ)
    Some single particle reconstruction software.
  • Calidris (Manhemsvägen, Sweden)
    Some EM related commercial software and hardware.
  • Xmipp: An Image Processing Package for Electron Microscopy (Centro Nacional de Biotec., Univ. Autónoma de Madrid, Spain)
    Single particle reconstruction software.
  • ImageScience (Berlin, Germany)
    Some commercial single-particle averaging software including Imagic.
  • ScienceGL (ScienceGL, Quincy,MA)
    Some EM related visualization software.
  • Stanford University School of Medicine High Resolution Electron Microscope Facility for Biomedical Sciences (McMahan and Kornberg Labs, Stanford, CA)
    A Neurobiology tomography lab and a single particle reconstruction lab.
  • (Helen Saibil, Birkbeck College, London)
    A single particle reconstruction lab.
  • Eva Nogales' Lab, Lawrence Berkley Lab, CA
    A single particle reconstruction lab.
  • Single particle analysis of Phosphorylase Kinase (Venien-Bryan, Lab. of Molecular Biophysics, Oxford Univ, UK)
    A single particle reconstruction lab.
  • Electron microscopy and image reconstruction of biological macromolecules (Bottcher Group, EMBL, Germany)
    A single particle reconstruction lab.
  • Automated Molecular Imaging Group (Scripps Research Inst., CA)
    SUPRIM, emScope, Leginon, & Viewit EM software.
  • Nikolaus Grigorieff's Lab (Brandeis Univ. RI)
    A single particle reconstruction lab.
  • David DeRosier's Lab (Brandeis Univ. RI)
    A single particle reconstruction lab.
  • Shahid Khan's Lab ( Molecular Biology Consortium, Chicago, IL)
    A single particle reconstruction lab.
  • Pawel Penczek's Lab (Univ. of Texas-Houston Medical School, TX)
    A single particle reconstruction lab.
  • Holger Stark's Lab (Max-Planck-Institut, Germany)
    A single particle reconstruction lab.
  • The Structural Electron Microscopy Facility at BUSM (Boston Univ. Medical College, Boston, MA)
    A single particle reconstruction lab.
  • Laboratory of Molecular Biology (MRC, Cambridge, UK)
    A single particle reconstruction lab.
  • P. A. Bullough's Lab (Sheffield Univ, UK)
    A single particle reconstruction lab.
  • Phoebe L. Stewart's Lab (Vanderbilt Univ.)
    A single particle reconstruction lab.
  • Macromolecular Structure Group, David Agard and John Sedat Labs (University of San Francisco, CA)
    Provides software for single particle reconstruction.
  • Ken Downing's Lab (Lawrence Berkeley Lab, Berkeley, CA)
    A single particle reconstruction lab.
  • Edward H. Egelman's Lab (Univ. Virginia, Charlottesville, VA)
    A single particle reconstruction lab.

• Electron Tomography WWW Sites
  
  • Wadsworth Lab's NIH Resource for Visualization of Biological Complexity (Albany, NY)
    Provides SPIDER software for electron tomography and an electron tomography resource.
  • The Boulder Laboratory for 3-Dimensional Fine Structure (University of Colorado, USA)
    Provides IMOD software for electron tomography and an electron tomography resource.
  • National Center for Microscopy and Imaging Research (San Diego, CA)
    Provides software for electron tomography and an electron tomography resource.
  • Macromolecular Structure Group, David Agard and John Sedat (University of San Francisco, CA)
    Provides software for electron tomography.
  • Image Science
    Image Science offers em2em software to convert images to/from common formats used in 3D electron microscopy"
  • Automated 3D electron microscopy (Max-Plank-Institut fur Biochemie, Martinsried, Germany)
    Information on electron tomography techniques.
  • Tietz Video and Image Processing Systems GmbH (Gauting, Germany)
    Provides software.
  • FEI Company (Hillsboro, OR)
    Provides software.
  • Sidec Technologies (Stockholm, Sweden).
    Provides software.
  • Electron Tomography (Utrecht University).
    Information on electron tomography techniques.
  • Electron microscopy for Dummies
    (Hanspeter Niederstrasser, U. C. Berkeley, CA)
    Practical info.
  • Automated Molecular Imaging Group (Scripps Research Inst., CA)
    SUPRIM, emScope, Leginon, & Viewit EM software.
  • Synoptics Semper and other microscopy software.
  • High Resolution Electron Microscopy & Surface Structure Facility (Northwestern Univ., Evanston, IL )
    

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  Source: sites.html     Last page update: 16 March. 2007     ArDean Leith

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