\\__`O O'__/ SPIDER -- COPYRIGHT 1993 ,__xXXXx___ HEALTH RESEARCH INC., ALBANY, NY. __xXXXx__ / /xxx\\ \\ VERSION: UNIX 10.1 ISSUED: 12/03/2003 / \\ DATE: 14-JAN-2004 AT 14:01:20 PROJECT EXTENSION: bat DATA EXTENSION: dat RESULTS FILE FLUSHED: 14-JAN-2004 at 14:01:20 .OPERATION: @clcla -- START OF: clcla.bat -- 1 ; ----------------------------------- 2 ; clcla.bat 3 ; automates use of Cl CLA command 4 ; assumes, user wants a dendrogram, and no cluster.doc 5 ; ------------------------------------ 6 x20=1 ;begining of factors used 7 x21=3 ;last factor used 8 x22=2 ;% of cutoff 9 10 ; ------ input files --------------- 11 12 FR G 13 control ; prefix of *_IMC file 14 15 ;---- output files ----------------- 16 17 FR G 18 clu01 ; name of cluster file 19 20 FR G 21 dendro ; name of dendrogram PS file 22 23 ;--------- END BATCH HEADER --------------- 24 25 x30=2**(x21-x20+1);# of groups to look for 26 27 CL CLA 28 ;file name prefix 29 ;cluster file name 30 x20-x21 ;factors used 31 ;iterations and centers 32 x30 ;# of groups to look for 33 x22 ;% cut off 34 Y ;dendrogram? 35 ;name of dendrogram 36 N ;no cluster.doc file 37 38 END 39 .OPERATION: ; ----------------------------------- .OPERATION: ; clcla.bat .OPERATION: ; automates use of Cl CLA command .OPERATION: ; assumes, user wants a dendrogram, and no cluster.doc .OPERATION: ; ------------------------------------ .OPERATION: x20=1 .OPERATION: x21=3 .OPERATION: x22=2 .OPERATION: ; ------ input files --------------- .OPERATION: FR G .PARAMETER LABEL & ASSOCIATED VALUE: control .OPERATION: ;---- output files ----------------- .OPERATION: FR G .PARAMETER LABEL & ASSOCIATED VALUE: clu01 .OPERATION: FR G .PARAMETER LABEL & ASSOCIATED VALUE: dendro .OPERATION: ;--------- END BATCH HEADER --------------- .OPERATION: x30=2**(x21-x20+1) .OPERATION: CL CLA .CORAN/PCA FILE PREFIX (e.g.. CORAN_01_)~: control .CLUSTER OUTPUT FILE: clu01.dat .FACTOR NUMBERS: X20-X21 .NUMBER OF ITERATIONS & CENTERS PER PARTITION: .NUMBER OF PARTITIONS: 8 OPENED (SF): control_IMC.dat OPENED (SU): clu01.dat FACTORS USED : 1 2 3 NBASE: 8 NITER: 5 NCLAS: 5 NKLA: 100 CLUSTERING BY AGGREGATION AROUND MOBILE CENTERS PARTITION OF: 80 OBJECTS CHARACTERIZED BY: 3 CARTESIAN COORDINATES PARTITION CONTAINS: 100 CLASSES THE 99 FIRST CONTAINS THE MOST STABLE OBJECTS IN THE 8 BASIC PARTITIONS EACH PARTITION IS GENERATED BY 5 ITERATIONS AROUND 5 SEED-OBJECTS DRAWN AT RANDOM CONSTRUCTION OF PARTITION WITH SEED-OBJECTS: 61 65 2 58 13 SIZE OF CLUSTERS AFTER: 5 ITERATIONS 16. 18. 17. 15. 14. CONSTRUCTION OF PARTITION WITH SEED-OBJECTS: 16 36 41 50 40 SIZE OF CLUSTERS AFTER: 5 ITERATIONS 17. 14. 13. 16. 20. CONSTRUCTION OF PARTITION WITH SEED-OBJECTS: 22 19 67 20 14 SIZE OF CLUSTERS AFTER: 5 ITERATIONS 10. 10. 14. 20. 26. CONSTRUCTION OF PARTITION WITH SEED-OBJECTS: 55 26 53 3 7 SIZE OF CLUSTERS AFTER: 5 ITERATIONS 10. 12. 17. 20. 21. CONSTRUCTION OF PARTITION WITH SEED-OBJECTS: 77 15 80 12 69 SIZE OF CLUSTERS AFTER: 5 ITERATIONS 20. 21. 18. 13. 8. CONSTRUCTION OF PARTITION WITH SEED-OBJECTS: 24 62 17 5 70 SIZE OF CLUSTERS AFTER: 5 ITERATIONS 12. 14. 17. 19. 18. CONSTRUCTION OF PARTITION WITH SEED-OBJECTS: 9 47 1 68 52 SIZE OF CLUSTERS AFTER: 5 ITERATIONS 13. 15. 17. 18. 17. CONSTRUCTION OF PARTITION WITH SEED-OBJECTS: 54 29 79 43 30 SIZE OF CLUSTERS AFTER: 5 ITERATIONS 19. 17. 14. 15. 15. SIZE OF THE:390625 CLUSTERS FROM THE CROSSED-PARTITION FOLLOWED BY THE CUMULATIVE PERCENTAGES. 10 8 6 5 5 4 3 3 3 3 3 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 12.5 22.5 30.0 36.3 42.5 47.5 51.3 55.0 58.8 62.5 66.3 68.8 71.3 73.8 76.3 78.8 81.3 83.8 86.3 88.8 90.0 91.3 92.5 93.8 95.0 96.3 97.5 98.8 100.0 SIZE OF RESIDUAL CLUSTER (NUMBER 100)= 0 PERCENTAGE= 0.00 ------------------------------------------------------------------------ 1 1 1 1 1 1 1 1 1 1 15 15 28 10 10 10 24 20 20 21 13 13 6 6 6 6 18 18 9 9 9 11 11 11 19 19 7 7 7 12 12 16 16 27 25 4 4 4 4 4 22 8 8 8 5 5 5 5 5 29 14 14 26 17 17 23 3 3 3 3 3 3 2 2 2 2 2 2 2 2 .PERCENT FOR CLASS CUTOFF (0=NO CUTOFF): 2.00 CLUSTERING CRITERION: WARDS METHOD DESCRIPTION OF THE HIERARCHY NODES NO. SENIOR JUNIOR NO. WEIGHT INDEX 21 12 16 2 4.0 4.0 * 22 7 19 2 5.0 7.5 * 23 9 18 2 5.0 7.5 * 24 14 17 2 4.0 9.0 * 25 13 20 2 4.0 9.0 * 26 10 15 2 5.0 15. * 27 5 8 2 8.0 30. * 28 11 22 3 8.0 38. * 29 6 25 3 8.0 51. * 30 4 21 3 9.0 1.20E+02 * 31 3 24 3 10. 1.25E+02 * 32 23 29 5 13. 1.59E+02 * 33 1 26 3 15. 2.54E+02 ** 34 2 31 4 18. 3.83E+02 *** 35 28 30 6 17. 5.69E+02 **** 36 32 35 11 30. 1.61E+03 ********** 37 27 34 6 26. 2.38E+03 *************** 38 33 36 14 45. 3.33E+03 ******************** 39 37 38 20 71. 1.52E+04 ****************************************************************************************** Y .DENDROGRAM POSTSCRIPT OUTPUT FILE: dendro.ps OPENED (SF): dendro.ps NODE INDEX SENIOR JUNIOR SIZE DESCRIPTION OF THE HIERARCHY CLASSES . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 21 4.010 12 16 2 4 4 22 7.500 7 19 2 4 4 23 7.503 9 18 2 4 4 24 9.001 14 17 2 4 4 25 9.019 13 20 2 4 4 26 14.701 10 15 2 4 4 27 30.000 5 8 2 4 4 28 37.501 11 22 3 4 4 4 29 51.010 6 25 3 4 4 4 30 119.579 4 21 3 4 4 4 31 124.513 3 24 3 4 4 4 32 158.864 23 29 5 4 4 4 4 4 33 254.169 1 26 3 4 4 4 34 383.066 2 31 4 4 4 4 4 35 568.855 28 30 6 4 4 4 4 4 4 36 1614.964 32 35 11 4 4 4 4 4 4 4 4 4 4 4 37 2383.753 27 34 6 4 4 4 4 4 4 38 3333.723 33 36 14 4 4 4 4 4 4 4 4 4 4 4 4 4 4 3915171.078 37 38 20 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 WEIGHT INDEX DENDROGRAM (SCALE 4.01******* ) 2.000 4.010 4 ... . 2.000 119.579 4 ... . 5.000 568.855 4 ...... . 2.000 7.500 4 ... . . . 3.000 37.501 4 ... . . . 3.000 1614.964 4 ............. . 2.000 9.019 4 ... . . . 2.000 51.010 4 ... . . . 4.000 158.864 4 .... . . . 2.000 7.503 4 .... . .. . 3.000 3333.723 4 ......................... . 2.000 14.701 4 ... . . . 3.000 254.169 4 .... . . . 10.000 15171.078 4 ........................................................................................................ . 2.000 9.001 4 ... . . . 2.000 124.513 4 ... . . . 6.000 383.066 4 ..... . . . 8.000 2383.753 4 ................... . . . 3.000 30.000 4 ... . . . . . 5.000 ------ 4 ........................................................................................................ . PLOT PLACED IN: dendro.ps .DO YOU WANT A CLUSTER DOC FILE? (Y/N): N LIST OF CLASS MEMBERS CLASS 1 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 4 0 0 0 0 0 5 0 0 0 0 0 6 0 0 0 0 7 0 0 0 8 0 0 0 9 0 0 0 10 0 0 0 11 0 0 0 12 0 0 13 0 0 14 0 0 15 0 0 16 0 0 17 0 0 18 0 0 19 0 0 20 0 0 LIST OF CLASS CENTER COORDINATES CLASS SIZE 1 2 3 1 10 4.4917 -0.0726 -0.0730 2 8 75.5000 0.0735 0.0865 3 6 68.5000 0.0970 -0.0097 4 5 47.0000 0.0942 -0.0731 5 5 56.0000 0.0650 0.0821 6 4 23.5000 -0.0680 -0.0820 7 3 37.0000 -0.0843 0.0567 8 3 52.0000 0.0622 0.0948 9 3 29.0000 -0.0794 -0.0258 10 3 14.0000 -0.0878 0.0467 11 3 32.0000 -0.0770 0.0715 12 2 39.5000 0.0056 -0.0084 13 2 20.5000 -0.0655 -0.0734 14 2 60.5000 0.0925 -0.0891 15 2 10.5000 -0.0966 0.0807 16 2 41.5000 0.0851 -0.0670 17 2 63.5000 0.0795 -0.0602 18 2 26.5000 -0.0656 -0.0694 19 2 34.5000 -0.0799 0.0569 20 2 17.5000 -0.0827 0.0631 RE-CLASSIFICATION LOOKUP TABLE ORIGINAL CLASS 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 2 1 2 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 1 1 3 1 2 2 3 2 3 3 2 3 1 3 3 3 2 1 3 2 3 3 3 4 1 2 2 3 4 3 3 4 3 1 3 3 3 2 1 3 2 3 3 3 5 1 2 2 3 4 5 3 4 5 1 3 3 5 2 1 3 2 5 3 5 6 1 2 2 3 4 5 6 4 5 1 6 3 5 2 1 3 2 5 6 5 7 1 2 3 4 5 6 7 5 6 1 7 4 6 3 1 4 3 6 7 6 8 1 2 3 4 5 6 7 5 6 8 7 4 6 3 8 4 3 6 7 6 9 1 2 3 4 5 6 7 5 8 9 7 4 6 3 9 4 3 8 7 6 10 1 2 3 4 5 6 7 5 8 9 7 4 6 10 9 4 10 8 7 6 11 1 2 3 4 5 6 7 5 8 9 7 10 6 11 9 10 11 8 7 6 12 1 2 3 4 5 6 7 5 8 9 7 10 11 12 9 10 12 8 7 11 13 1 2 3 4 5 6 7 5 8 9 10 11 12 13 9 11 13 8 7 12 14 1 2 3 4 5 6 7 8 9 10 11 12 13 14 10 12 14 9 7 13 15 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 12 14 9 7 13 16 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 12 14 9 7 16 17 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 12 16 9 7 17 18 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 12 16 17 7 18 19 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 12 16 17 18 19 DISPERSIONS AND INTER-CLASS DISTANCES OF 10 LARGEST CLUSTERS CLASS DISP NEIGHBORS 1 2 3 4 5 6 7 8 9 10 1 2.8857 10 6 9 2 2.2914 3 5 8 71.0086 3 1.7092 2 5 8 64.0085 7.0007 4 1.4145 8 5 7 42.508628.500521.5001 5 1.4144 8 4 3 51.508719.500012.5004 9.0014 6 1.1183 9 11 10 19.008352.000545.000423.500632.5007 7 0.8167 11 9 4 32.508538.500331.500610.002419.000613.5007 8 0.8167 5 4 7 47.508723.500016.5004 5.0029 4.000028.500815.0008 9 0.8201 11 6 7 24.508346.500439.500418.000927.0006 5.5003 8.000423.0008 10 0.8169 6 1 9 9.509061.500254.500333.000742.0003 9.500923.000038.000315.0002 11 0.8167 9 7 6 27.508643.500336.500515.001724.0004 8.5014 5.000020.0005 3.001618.0000 .OPERATION: END COMPLETED 14-JAN-2004 at 14:01:21