\__`O O'__/ SPIDER -- COPYRIGHT ,__xXXXx___ HEALTH RESEARCH INC., ALBANY, NY. __xXXXx__ / /xxx\ \ VERSION: UNIX 17.13 ISSUED: 05/29/2009 / \ DATE: 18-JUN-2009 AT 15:50:26 PROJECT EXTENSION: spi DATA EXTENSION: dat RESULTS FILE FLUSHED: 18-JUN-2009 at 15:50:26 .OPERATION: @clcla -- START OF: clcla.spi -- 1 ; ----------------------------------- 2 ; clcla.spi 3 ; PURPOSE: invokes CL CLA command 4 ; ASSUMES: user wants a dendrogram, and no cluster.doc 5 6 ; -------- INPUT --------------------- 7 [f1] = 1 ; Beginning of factors used 8 [f2] = 3 ; Last factor used 9 [cutoff] = 0 ; Cutoff % 10 11 ; ------ INPUT FILES --------------- 12 13 FR G 14 [prefix]data/control ; Prefix of *_IMC file 15 16 ;---- OUTPUT FILES ----------------- 17 18 FR G 19 [output]data/clcla_sma_clus ; Name of cluster file 20 21 FR G 22 [dend]data/clcla_dend.ps ; Name of dendrogram PS file 23 24 FR G 25 [doc]data/clcla_dend ; Name of dendrogram coc file 26 27 ;--------- END BATCH HEADER --------------- 28 29 VM 30 echo " Running 'CL CLA' xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx" 31 VM 32 echo " " 33 34 CL CLA 35 [prefix] ; File name prefix (input) 36 [output] ; Cluster file name (output) 37 3 ; Factors used 38 5,4 ; Iterations and centers 39 8 ; Partitions = # of groups to look for 40 0 ; Occupancy cut off 41 [dend] ; Name of dendrogram PS (output) 42 [cutoff] ; Cutoff % 43 [doc] ; Name of dendrogram doc file (output) 44 45 VM 46 gedit [doc].$DATEXT & 47 VM 48 evince [dend] & 49 50 VM 51 echo " Displaying dendrograms xxxxxxxxxxxxxxxxxxxxxxxxxxxx" 52 VM 53 echo " " 54 55 EN 56 .OPERATION: .; -----------------------------------: .OPERATION: .; clcla.spi: .OPERATION: .; PURPOSE: invokes CL CLA command: .OPERATION: .; ASSUMES: user wants a dendrogram, and no cluster.doc: .OPERATION: .; -------- INPUT ---------------------: .OPERATION: [f1] = 1 ; Beginning of factors used .OPERATION: [f2] = 3 ; Last factor used .OPERATION: [cutoff] = 0 ; Cutoff % .OPERATION: .; ------ INPUT FILES ---------------: .OPERATION: FR G .SYMBOL NAME & ASSOCIATED VALUE: [prefix]data/control .OPERATION: .;---- OUTPUT FILES -----------------: .OPERATION: FR G .SYMBOL NAME & ASSOCIATED VALUE: [output]data/clcla_sma_clus .OPERATION: FR G .SYMBOL NAME & ASSOCIATED VALUE: [dend]data/clcla_dend.ps .OPERATION: FR G .SYMBOL NAME & ASSOCIATED VALUE: [doc]data/clcla_dend .OPERATION: .;--------- END BATCH HEADER ---------------: .OPERATION: VM .SYSTEM COMMAND: echo " Running 'CL CLA' xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx" .OPERATION: VM .SYSTEM COMMAND: echo " " .OPERATION: CL CLA .CORAN/PCA FILE PREFIX (e.g.. CORAN_01_): data/control .CLUSTER OUTPUT FILE: data/clcla_sma_clus.dat .NUMBER OF FACTORS: 3 .NUMBER OF ITERATIONS & CENTERS PER PARTITION: 5 4 .NUMBER OF PARTITIONS: 8 OPENED (SF): data/control_IMC.dat OPENED (SU): data/clcla_sma_clus.dat FACTORS USED: 1... 3 #PARTITIONS: 8 #ITER: 5 #CENTERS: 4 INITIAL CLASSES: 100 CLUSTERING BY AGGREGATION AROUND MOBILE CENTERS PARTITION OF: 80 OBJECTS CHARACTERIZED BY: 3 CARTESIAN COORDINATES PARTITION CONTAINS: 100 CLASSES THE 99 FIRST CONTAINS THE MOST STABLE OBJECTS IN THE: 8 BASIC PARTITIONS EACH PARTITION IS GENERATED BY: 5 ITERATIONS AROUND: 4 RANDOMLY DRAWN SEED-OBJECTS CONSTRUCTION OF PARTITION WITH SEED-OBJECTS: 21 80 29 37 SIZE OF CLUSTERS AFTER: 5 ITERATIONS 20. 20. 20. 20. CONSTRUCTION OF PARTITION WITH SEED-OBJECTS: 62 77 75 38 SIZE OF CLUSTERS AFTER: 5 ITERATIONS 40. 20. 10. 10. CONSTRUCTION OF PARTITION WITH SEED-OBJECTS: 63 73 40 59 SIZE OF CLUSTERS AFTER: 5 ITERATIONS 40. 10. 20. 10. CONSTRUCTION OF PARTITION WITH SEED-OBJECTS: 66 43 56 67 SIZE OF CLUSTERS AFTER: 5 ITERATIONS 19. 39. 11. 11. CONSTRUCTION OF PARTITION WITH SEED-OBJECTS: 45 19 49 2 SIZE OF CLUSTERS AFTER: 5 ITERATIONS 20. 20. 19. 21. CONSTRUCTION OF PARTITION WITH SEED-OBJECTS: 57 15 33 52 SIZE OF CLUSTERS AFTER: 5 ITERATIONS 20. 20. 20. 20. CONSTRUCTION OF PARTITION WITH SEED-OBJECTS: 64 76 18 42 SIZE OF CLUSTERS AFTER: 5 ITERATIONS 30. 10. 20. 20. CONSTRUCTION OF PARTITION WITH SEED-OBJECTS: 60 32 39 20 SIZE OF CLUSTERS AFTER: 5 ITERATIONS 20. 10. 14. 36. SIZE OF THE CLUSTERS FROM THE CROSSED-PARTITION FOLLOWED BY THEIR CUMULATIVE PERCENTAGES. 10 10 10 10 10 9 9 6 4 1 1 12.5 25.0 37.5 50.0 62.5 73.8 85.0 92.5 97.5 98.8 100.0 SIZE OF RESIDUAL CLUSTER (NUMBER 100)= 0 PERCENTAGE= 0.00 ---------------------------------------------------------------------- CLASS ASSIGNMENT FOR EACH IMAGE: 7 7 7 7 11 7 7 7 7 7 4 4 4 4 4 4 4 4 4 4 3 3 3 3 3 3 3 3 3 3 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 5 5 5 5 5 5 5 5 5 5 8 8 8 9 8 9 9 9 8 8 6 6 6 6 6 10 6 6 6 6 CLASS OCCUPANCY: 0.... 10 CLASSES: 100 .OCCUPANCY LEVEL FOR CLASS CUTOFF ( = NO CUTOFF): 0 USING: 100 CLASSES. CLUSTERING CRITERION: WARDS METHOD DESCRIPTION OF THE HIERARCHY NODES NO. SENIOR JUNIOR NO. WEIGHT INDEX 12 8 9 2 10. 6.09E-04 * 13 6 10 2 10. 1.14E-03 * 14 7 11 2 10. 2.22E-03 * 15 2 4 2 20. 7.77E-02 *** 16 3 14 3 20. 0.11 **** 17 5 13 3 20. 0.12 ***** 18 1 12 3 20. 0.16 ****** 19 15 16 5 40. 0.49 ****************** 20 17 18 6 40. 0.68 ************************ 21 19 20 11 80. 2.6 *************************************************************************** .DENDROGRAM POSTSCRIPT OUTPUT FILE: data/clcla_dend.ps OPENED (SF): data/clcla_dend.ps .ENTER PLOT CUTOFF (0 .. 100): 0.00 NODE INDEX SENIOR JUNIOR SIZE DESCRIPTION OF HIERARCHY CLASSES . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 12 0.000 8 9 2 8 9 13 0.021 6 10 2 6 10 14 0.063 7 11 2 7 11 15 3.002 2 4 2 2 4 16 4.104 3 14 3 3 7 11 17 4.798 5 13 3 5 6 10 18 6.129 1 12 3 1 8 9 19 18.870 15 16 5 2 4 3 7 11 20 26.511 17 18 6 5 6 10 1 8 9 21 100.000 19 20 11 2 4 3 7 11 5 6 10 1 8 9 ID INDEX CLASS DENDROGRAM (SCALE: 0..... 100 ) 64 0 9 ... 66 0 9 ... 67 0 9 ... 68 0 9 ... 61 0 8 ... 62 0 8 ... 63 0 8 ... 65 0 8 ... 69 0 8 ... 70 6 8 ......... 41 0 1 ... . 42 0 1 ... . 43 0 1 ... . 44 0 1 ... . 45 0 1 ... . 46 0 1 ... . 47 0 1 ... . 48 0 1 ... . 49 0 1 ... . 50 27 1 ............................. 76 0 10 ... . 71 0 6 ... . 72 0 6 ... . 73 0 6 ... . 74 0 6 ... . 75 0 6 ... . 77 0 6 ... . 78 0 6 ... . 79 0 6 ... . 80 5 6 ....... . 51 0 5 ... . . 52 0 5 ... . . 53 0 5 ... . . 54 0 5 ... . . 55 0 5 ... . . 56 0 5 ... . . 57 0 5 ... . . 58 0 5 ... . . 59 0 5 ... . . 60 100 5 ........................................................................................................ 5 0 11 ... . 1 0 7 ... . 2 0 7 ... . 3 0 7 ... . 4 0 7 ... . 6 0 7 ... . 7 0 7 ... . 8 0 7 ... . 9 0 7 ... . 10 4 7 ....... . 21 0 3 ... . . 22 0 3 ... . . 23 0 3 ... . . 24 0 3 ... . . 25 0 3 ... . . 26 0 3 ... . . 27 0 3 ... . . 28 0 3 ... . . 29 0 3 ... . . 30 19 3 ...................... . 11 0 4 ... . . 12 0 4 ... . . 13 0 4 ... . . 14 0 4 ... . . 15 0 4 ... . . 16 0 4 ... . . 17 0 4 ... . . 18 0 4 ... . . 19 0 4 ... . . 20 3 4 ...... . . 31 0 2 ... . . . 32 0 2 ... . . . 33 0 2 ... . . . 34 0 2 ... . . . 35 0 2 ... . . . 36 0 2 ... . . . 37 0 2 ... . . . 38 0 2 ... . . . 39 0 2 ... . . . 40 100 2 ........................................................................................................ PLOT PLACED IN: data/clcla_dend.ps .DENDROGRAM DOC. FILE FILE: data/clcla_dend 18-JUN-2009 AT 15:50:28 OPENED NEW DOC FILE: data/clcla_dend LIST OF CLASS MEMBERS CLASS 1 41 42 43 44 45 46 47 48 49 50 2 31 32 33 34 35 36 37 38 39 40 3 21 22 23 24 25 26 27 28 29 30 4 11 12 13 14 15 16 17 18 19 20 5 51 52 53 54 55 56 57 58 59 60 6 71 72 73 74 75 77 78 79 80 7 1 2 3 4 6 7 8 9 10 8 61 62 63 65 69 70 9 64 66 67 68 10 76 11 5 LIST OF CLASS CENTER COORDINATES CLASS SIZE 1 2 3 1 10 -0.0843 0.0955 0.0813 2 10 0.0820 -0.0813 -0.0706 3 10 0.0812 0.0812 -0.0724 4 10 0.0995 -0.0840 0.0528 5 10 -0.0871 -0.0898 0.0830 6 9 -0.1082 -0.0882 -0.0585 7 9 0.0988 0.0785 0.0709 8 6 -0.1040 0.0867 -0.0708 9 4 -0.0886 0.0866 -0.0750 10 1 -0.1245 -0.0765 -0.0878 11 1 0.1131 0.0810 0.0235 RE-CLASSIFICATION LOOKUP TABLE ORIGINAL CLASS 1 2 3 4 5 6 7 8 9 10 11 2 1 2 2 2 1 1 2 1 1 1 2 3 1 2 2 2 3 3 2 1 1 3 2 4 1 2 3 2 4 4 3 1 1 4 3 5 1 2 3 2 4 4 3 5 5 4 3 6 1 2 3 2 4 5 3 6 6 5 3 7 1 2 3 2 4 5 6 7 7 5 6 8 1 2 3 4 5 6 7 8 8 6 7 9 1 2 3 4 5 6 7 8 8 6 9 10 1 2 3 4 5 6 7 8 8 9 10 DISPERSIONS AND INTER-CLASS DISTANCES OF 10 LARGEST CLUSTERS CLASS DISP NEIGHBORS 1 2 3 4 5 6 7 8 9 10 1 0.0236 8 9 7 2 0.0216 4 3 11 0.2863 3 0.0221 11 7 2 0.2263 0.1624 4 0.0226 2 7 11 0.2585 0.1246 0.2081 5 0.0258 6 10 1 0.1853 0.2286 0.2858 0.1891 6 0.0205 10 5 8 0.2321 0.1907 0.2545 0.2357 0.1431 7 0.0224 11 3 4 0.1841 0.2141 0.1445 0.1635 0.2510 0.2956 8 0.0223 9 1 10 0.1536 0.2506 0.1853 0.2930 0.2347 0.1754 0.2475 9 0.0126 8 1 10 0.1566 0.2394 0.1699 0.2843 0.2367 0.1766 0.2376 0.0159 10 0.0000 6 8 9 0.2446 0.2072 0.2596 0.2646 0.1754 0.0355 0.3147 0.1654 0.1675 11 0.0000 7 3 4 0.2062 0.1901 0.1011 0.1681 0.2697 0.2904 0.0496 0.2368 0.2246 0.3060 .OPERATION: VM .SYSTEM COMMAND: gedit data/clcla_dend.dat & .OPERATION: VM .SYSTEM COMMAND: evince data/clcla_dend.ps & .OPERATION: VM .SYSTEM COMMAND: echo " Displaying dendrograms xxxxxxxxxxxxxxxxxxxxxxxxxxxx" .OPERATION: VM .SYSTEM COMMAND: echo " " .OPERATION: EN COMPLETED 18-JUN-2009 at 15:50:28