; Convert : converts a raw scan file to a spider file.
; Converts scan file values to densities.
; Expects the raw file to have the extension *.tif

; For ZI files only!
; X33 = overview number, where
;  1 = full sized image
;  2 = 1/2 size
;  3 = 1/4 size

X33 = 1    ; overview number

;  ----------- Input files --------------
FR L
<in>../Micrographs/mic{****x11}  ; input ***.tif files

FR L
<filenums>../filenums     ; file numbers

FR L
<params>../params    ; parameter file

; ----------- Output files --------------
FR L
<out>../Micrographs/mic{****x11}  ; output files in Spider format

; -------------------- END BATCH HEADER ----------------------------

UD N,x20
<filenums>

DO LB1 x12 = 1,x20

UD x12,x11
<filenums>     ; x11 is now the file number

@convert_p1[x11,x33]
<params>    ; parameter file
<in>        ; input (reads mic***.tif)
<out>       ; output (writes mic***.spi)

LB1

EN D