; Creates average and variance images
;
; SOURCE: spider/docs/techs/recon/newprogs/display.spi
;
; PURPOSE: Creates a large circular plot (a SPIDER image) containing smaller
; circles representing the 83 angular groups. The radii of the 83 small
; circles are proportional to the number of particles in each group.
;
; This batch files creates displays for all defocus groups.
; I/O PARAMETERS AND FILES ARE SET HERE:
[type] = 1 ; 1 = put projection numbers in display
; 0 = don't put in numbers
; -1 = numbers only, no circles!
[back] = 1 ; 1 = white background, 0 = black background
; ------------ Input files ---------------------------------------
[refangles] = '../Alignment/refangles' ; Doc file of the 83 angles
[defgrps] = '../Alignment/sel_group' ; Defocus groups selection file
[how_many] = 'how_many' ; Number of particles per projection
; --------------- Output files -----------------------------------
[displaydir] = 'display' ; Directory for group gnuplot command script
[display] = '[displaydir]/cndis_by_group' ; Stacked plot images
[displayall] = '[displaydir]/cndis_all_groups' ; All group plot image
; -------------- END BATCH HEADER ---------------------------------
VM
mkdir -p [displaydir]
VM
echo " Computing images of reference view usage" ; echo ' '
DO ; Loop over all defocus group(s)
UD NEXT [key],[grp] ; Get group from group sel. file
[defgrps]
IF ([key] .LE. 0) EXIT ; End of groups in doc file
@display_p([type],[back])
[refangles] ; Reference angles file (input)
df{***[grp]}/[how_many] ; Doc file of particles per projection (input)
[display]@{***[grp]} ; Stacked image file (output)
ENDDO
VM
echo " Use Web Montage to display stacked images of reference view usage from: [display].$DATEXT"
; Put sum of all defocus groups in [displayall]
[grp] = 0
@display_p([type],[back])
[refangles] ; Reference angles file (input)
[how_many] ; Doc file # of particles / projection (input)
[displayall] ; Output file (input)
VM
echo ' '
VM
echo " Use Web to show image of overall reference view usage: [displayall].$DATEXT" ; echo ' '
EN
;