; Runs defocus group loop & endmerge in parallel
;
; SOURCE: pub_refine_start.pam
; [rn] ArDean Leith Feb 2005
; [] ArDean Leith Dec 2005
; clone ArDean Leith Jan 2009
;
; PURPOSE: Runs defocus group loop & endmerge ArDean Leith Feb. 2002
;
; MASTER COPY: /net/bali/usr1/spider/docs/techs/recon/newprogs/
;
; PURPOSE: Calls grploop/smangloop, or endmerge in parallel
;
; CALLED FROM: Run directly using PubSub
;
; INPUT REGISTERS (SET On operation line):
; [task] Task selector
; [iter] Current iteration
; [grp] Group number
; [rn] Random number for unique DOC_SYNC files
MD
TR OFF ; Loop info turned off
MD
VB OFF ; File info turned off
; Input global parameters & file names
@refine_settings([maxspfreq],[radius],[alignsh],[prj-radius],[iter1],[iter-end],[lambda],[small-ang],[winsize],[converg])
MD ; Set OMP processors to all available
SET MP
0
MY FL
IF([task].EQ.-1)THEN ; Runs angle setting task
@cpang([iter],[grp])
ENDIF
RR S [ang-step] ; Angular step (varies with iteration)
[ang-steps]
[iter]
RR S [ang-limit] ; Restriction on ang. search (varies with iteration)
[ang-limits]
[iter]
IF([task].EQ.0)THEN ; Runs main refinement grploop tasks
; Copy files to local disk
@pub_ref_loop_clone([iter],[grp])
; Returns [stop] which is communicated via document files
@grploop([ang-step],[ang-limit],[radius],[alignsh],[prj-radius],[iter],[grp],[stop],[maxspfreq])
; Copy local disk files to server disk
@pub_ref_loop_declone([iter],[grp])
ENDIF
IF([task].EQ.1)THEN ; Runs main refinement smangloop tasks
; Returns [stop] which is communicated via document files
@smangloop([ang-step],[radius],[alignsh],[prj-radius],[iter],[grp],[stop],[maxspfreq])
ENDIF
IF([task].EQ.2)THEN ; Runs endmerge consolidation task
[next-iter]=[iter] ; Operates on current iteration
; Copy files to local disk
@pub_ref_merge_clone([iter],[grp])
@endmerge([prj-radius],[grp],[next-iter])
; Copy local disk files to server disk
@pub_ref_merge_declone([iter],[grp])
ENDIF
MY FL
; Signal master SPIDER that this task is finished
@pub_refine_doc_sync([task],[stop],[grp],[rn])
EN ; This SPIDER ends now
;