(Updated 2010 Aug 30)

Notes

• The following list will not be exhaustive.
• Headers may not match outputs exactly, but should be equivalent.

sel_micrograph

;              MICROGRAPH 

• CREATED BY: montagefromdoc.py
• USED BY: used by many batch files, montagefromdoc.py

Power_Spectra/def_avg

;       MICROGRAPH    DEFOCUS      DF_GROUP    AVGDEFOCUS 

• CREATED BY: defavg.spi
• USED BY: dfgoodapsh.spi

Particles/coords/sndc{****[mic-num]}

;         XCOORD       YCOORD      MICSLICE     PEAK_HT 

• CREATED BY: lfc_pick.spi
• USED BY: pnums.spi, listallparticles.spi

Particles/order_picked

;       MICROGRAPH    NUMPARTS     CUMTOTAL    FIRST_PART    LASTPART 

• CREATED BY: pnums.spi
• USED BY: listallparticles.spi

Particles/coords/docall{****[mic-num]}

;       MIC_SLICE    GLOBAL_PART 

• CREATED BY: listallparticles.spi
• USED BY: sel_by_group.spi, win2stk.spi

Particles/coords/mic2global{****[mic-num]}

; KEY=MIC_SLICE /  COLUMN1=GLOBAL_PART 

• CREATED BY: listallparticles.spi
• USED BY: selectbyviewall.spi, regroup.spi

Alignment/sel_particles_{***[group-num]}

;        DF_SLICE     MICSLICE     DF_GROUP    MICROGRAPH 

• CREATED BY: sel_by_group.spi
• USED BY: selectbyviewall.spi, regroup.spi

Reconstruction/sel_group{,_cclim,_cclim_sorted}

;        DF_GROUP     NUMPARTS    AVGDEFOCUS 

• sel_group created by sel_by_group.spi
• sel_group_{cclim,cclim_sorted} created by goodparticlesbydf.spi
• USED BY: many batch files

Alignment/align_01_{***[df-group]}

;                   PSI         THETA         PHI       REF_PROJ     DF_SLICE     IN_PLANE    CUM_XSHIFT   CUM_YSHIFT    NUM_PROJ      ANGDIF       CC_ROT    CURR_INPLANE CURR_XSHIFT  CURR_YSHIFT     MIRROR 

• CREATED BY: apshgrp.spi
• USED BY: many batch files

Reconstruction/stack2particle{***[df-group]}

;      GLOBAL_PART   MICROGRAPH    MICSLICE     DF_SLICE 

• CREATED BY: selectbyviewall.spi or regroup.spi
• USED BY: goodparticlesbydf.spi, reselect_byview.spi, regroup.spi

Reconstruction/select/sel{***[view-num]}

;       VIEW_SLICE  GLOBAL_PART    DF_SLICE      CC_ROT       MIRROR      DF_GROUP       VIEW 

• CREATED BY: selectbyviewall.spi
• USED BY: filterbyview.spi, classify.spi, combinegoodclasses.spi, recheck.spi, reselect_byview.spi

Reconstruction/df{***[df-group]}/select/sel{***[view-num]}

;        DF_SLICE      CC_ROT       MIRROR 

• CREATED BY: selectbyviewall.spi
• USED BY: select.spi, bestim.spi

Reconstruction/select/prj{***[view-num]}/docclass{***[class-num]}

;       VIEW_SLICE  GLOBAL_PART      CCC         CC_ROT       MIRROR      DF_GROUP     DF_SLICE 

• CREATED BY: classify.spi
• USED BY: combinegoodclasses.spi

Reconstruction/select/prj{***[view-num]}/classes_by_ccc

;       CLASSNUM       CCC        VARIANCE_SD 

• CREATED BY: classify.spi
• USED BY: verifybyview.py, byhand2goodclasses.spi

Reconstruction/select/prj{***[view-num]}/goodsel

;       VIEW_SLICE  GLOBAL_PART    DF_SLICE      CC_ROT       MIRROR      DF_GROUP       VIEW 

• CREATED BY: combinegoodclasses.spi
• USED BY: recheck.spi, histgoodccc.spi

Reconstruction/combinedgood.dat

;       VIEW_SLICE  GLOBAL_PART    DF_SLICE      CC_ROT       MIRROR      DF_GROUP       VIEW 

• CREATED BY: histgoodccc.spi
• USED BY: goodparticlesbydf.spi, regroup.spi

Reconstruction/df{***[df-group]}/goodparticles

;        DF_SLICE   GLOBAL_PART     CC_ROT 

• CREATED BY: goodparticlesbydf.spi
• USED BY: dfgoodapsh.spi, consecprepare.spi, intersect-by-group.spi

Reconstruction/sel_particles_{***[group-num]}

;        DF_SLICE     MICSLICE     DF_GROUP    MICROGRAPH   GLOBAL_PART 

• CREATED BY: dfgoodapsh.spi or regroup.spi
• USED BY: bestim.spi, bps-by-df.spi, consecprepare.spi