Carey J, Cole J, Venkata SLG, Hoyt H, Mingle L, Nicholas D, Musser KA, Wolfgang WJ. Determination of Genomic Epidemiology of Historical Clostridium perfringens Outbreaks in New York State by Use of Two Web-Based Platforms: National Center for Biotechnology Information Pathogen Detection and FDA GalaxyTrakr. J Clin Microbiol. 2021; 59 (2): e02200-20. DOI: 10.1128/JCM.02200-20
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Haas W, Lapierre P, Musser KA. A Bioinformatic Pipeline for Improved Genome Analysis and Clustering of Isolates during Outbreaks of Legionnaires' Disease. J Clin Microbiol. 2021; 59 (2): e00967-20. DOI: 10.1128/JCM.00967-20
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Chan JL, Nazarian E, Musser KA, Snavely EA, Fung M, Doernberg SB, Pouch SM, Leekha S, Anesi JA, Kodiyanplakkal RPL, Turbett SE, Spalding Walters M, Epstein L. Prevalence of carbapenemase-producing organisms among hospitalized solid organ transplant recipients, five US hospitals, 2019-2020. Transpl Infect Dis. 2022; 24 (2): e13785. DOI: 10.1111/tid.13785
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Simner PJ, Musser KA, Mitchell K, Wise MG, Lewis S, Yee R, Bergman Y, Good CE, Abdelhamed AM, Li H, Laseman EM, Sahm D, Pitzer K, Quan J, Walker GT, Jacobs MR, Rhoads DD. Multicenter Evaluation of the Acuitas AMR Gene Panel for Detection of an Extended Panel of Antimicrobial Resistance Genes among Bacterial Isolates. J Clin Microbiol. 2022; 60 (3): e0209821. DOI: 10.1128/JCM.02098-21
Pubmed Web Address
Walker TM, Miotto P, Köser CU, Fowler PW, Knaggs J, Iqbal Z, Hunt M, Chindelevitch L, Farhat M, Cirillo DM, Comas I, Posey J, Omar SV, Peto TE, Suresh A, Uplekar S, Laurent S, Colman RE, Nathanson CM, Zignol M, Walker AS; CRyPTIC Consortium; Seq&Treat Consortium, Crook DW, Ismail N, Rodwell TC. The 2021 WHO catalogue of Mycobacterium tuberculosis complex mutations associated with drug resistance: A genotypic analysis. Lancet Microbe. 2022; 3 (4): e265-e273. DOI: 10.1016/S2666-5247(21)00301-3
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Fowler PW, Wright C, Spiers H, Zhu T, Baeten EML, Hoosdally SW, Gibertoni Cruz AL, Roohi A, Kouchaki S, Walker TM, Peto TEA, Miller G, Lintott C, Clifton D, Crook DW, Walker AS; Zooniverse Volunteer Community; CRyPTIC Consortium. A crowd of BashTheBug volunteers reproducibly and accurately measure the minimum inhibitory concentrations of 13 antitubercular drugs from photographs of 96-well broth microdilution plates. Elife. 2022; (11): e75046. DOI: 10.7554/eLife.75046
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Shea J, Smith C, Halse TA, Kohlerschmidt D, Rourke AK, Musser KA, Escuyer V, Lapierre P. Novel Mycobacterium tuberculosis Complex Genotype Related to M. caprae. Emerg Infect Dis. 2022; 28 (7): 1431-1436. DOI: 10.3201/eid2807.212353
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Prussing C, Southwick K, Snavely E, Kidney A, Randall L, Sossei A, Dentinger L, Shushe O, Fernandez R, Haas W, Lapierre P, Singh N, Nazarian EJ, Musser KA, Mitchell K. Comparative analysis of multiplexed PCR and short- and long-read whole genome sequencing to investigate a large Klebsiella pneumoniae outbreak in New York State. Diagn Microbiol Infect Dis. 2022; 104 (2): 115765. DOI: 10.1016/j.diagmicrobio.2022.115765
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The CRyPTIC Consortium. A data compendium associating the genomes of 12,289 Mycobacterium tuberculosis isolates with quantitative resistance phenotypes to 13 antibiotics. PLoS Biol. 2022; 20 (8): e3001721. DOI: 10.1371/journal.pbio.3001721
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The CRyPTIC Consortium. Genome-wide association studies of global Mycobacterium tuberculosis resistance to 13 antimicrobials in 10,228 genomes identify new resistance mechanisms. PLoS Biol. 2022; 20 (8): e3001755. DOI: 10.1371/journal.pbio.3001755
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